Package index • ideal

The ideal package Main functions and info on the `ideal` package
`ideal()`	ideal: Interactive Differential Expression Analysis
`ideal-package` `ideal-pkg`	ideal: Interactive Differential Expression Analysis
Working with Differentially Expressed genes Functions for extracting and plotting overviews of Differentially Expressed genes
`deseqresult2DEgenes()`	Generate a tidy table with the DE genes from the results of DESeq
`deseqresult2tbl()`	Generate a tidy table with the results of DESeq
`plot_ma()`	MA-plot from base means and log fold changes
`plot_volcano()`	Volcano plot for log fold changes and log p-values
`ggplotCounts()`	Plot normalized counts for a gene
Functional interpretation Functions for working performing functional interpretation
`goseqTable()`	Extract functional terms enriched in the DE genes, based on goseq
`read_gmt()`	Read in a GMT file
`sig_heatmap()`	Plot a heatmap of the gene signature on the data
Miscellaneous functions Miscellaneous functions used in the `ideal` package
`sepguesser()`	Make an educated guess on the separator character
`wrapup_for_iSEE()`	wrapup_for_iSEE
Deprecated functions in ideal
`deprecated`	Deprecated functions in ideal

Reference