Functions that are on their way to the function afterlife. Their successors are also listed.
All functions throw a warning, with a deprecation message pointing towards its descendent (if available).
The successors of these functions are likely coming after the rework that
led to the creation of the mosdef package. See more into its
documentation for more details.
goseqTable() is now being replaced by the more flexible
mosdef::run_goseq() function (which is even faster)
ggplotCounts() is now being replaced by the more flexible, better
designed, and actually even more good looking mosdef::gene_plot()
function, with better default behavior and all.
deseqresult2tbl() and deseqresult2DEgenes() are now replaced by the
more flexible mosdef::deresult_to_df()
The internally defined functions createLinkENS(), createLinkGeneSymbol(),
and createLinkGO() are now replaced by the equivalent functions in mosdef:
mosdef::create_link_ENSEMBL(), mosdef::create_link_NCBI() and
mosdef::create_link_GO(). Notably, the mosdef package expanded on the
concept of automatically generated buttons, taking this to the extreme of
efficiency with the mosdef::buttonifier() function
# try(goseqtable())