library(sessionDiffo)
Ever encountered a situation where the configuration of two systems is different?
Examples:
a newer package introduced changes in the functionality, and you have different setups on different machines. You might want to pinpoint what is different
debugging/reporting an issue: you encounter a bug, or someone reports it to you, and you want to compare the full set of packages that are available in the two different setups
si1_output <- system.file("extdata", "si1.txt", package = "sessionDiffo") si2_output <- system.file("extdata", "si2.txt", package = "sessionDiffo") si1 <- parse_si(si1_output) #> [1] "yes" si2 <- parse_si(si2_output) #> [1] "yes" comparison_df <- compare_si(si1, si2) knitr::kable(comparison_df)
| package | version_si1 | version_si2 | comparison |
|---|---|---|---|
| AnnotationDbi | 1.48.0 | 1.48.0 | equal |
| bigmemory | 4.5.33 | 4.5.33 | equal |
| Biobase | 2.46.0 | 2.46.0 | equal |
| BiocGenerics | 0.32.0 | 0.32.0 | equal |
| BiocParallel | 1.20.0 | 1.20.0 | equal |
| clusterProfiler | 3.14.0 | 3.14.0 | equal |
| covr | 3.3.2 | 3.3.2 | equal |
| DelayedArray | 0.12.0 | 0.12.0 | equal |
| DESeq2 | 1.26.0 | 1.26.0 | equal |
| GeneTonic | 0.6.0 | 0.7.0 | older |
| GenomeInfoDb | 1.22.0 | 1.22.0 | equal |
| GenomicFeatures | 1.38.0 | 1.38.0 | equal |
| GenomicRanges | 1.38.0 | 1.38.0 | equal |
| GO.db | 3.10.0 | 3.10.0 | equal |
| graph | 1.64.0 | 1.64.0 | equal |
| IRanges | 2.20.0 | 2.20.0 | equal |
| knitr | 1.26 | 1.26 | equal |
| macrophage | 1.2.0 | 1.2.0 | equal |
| magrittr | 1.5 | 1.5 | equal |
| matrixStats | 0.55.0 | 0.55.0 | equal |
| org.Hs.eg.db | 3.10.0 | 3.10.0 | equal |
| rmarkdown | 1.17 | 1.17 | equal |
| S4Vectors | 0.24.0 | 0.24.0 | equal |
| shiny | 1.4.0 | 1.3.2 | newer |
| SparseM | 1.77 | 1.77 | equal |
| SummarizedExperiment | 1.16.0 | 1.16.0 | equal |
| testthat | 2.3.0 | 2.3.0 | equal |
| THEBADONE | NA | 6.6.6 | Only in 2 |
| topGO | 2.37.0 | 2.37.0 | equal |
| tximeta | 1.4.2 | 1.4.2 | equal |
Ok, this time it is only one. So here there is no need of sessionDiffo
sessionInfo() #> R version 4.0.0 (2020-04-24) #> Platform: x86_64-pc-linux-gnu (64-bit) #> Running under: Ubuntu 16.04.6 LTS #> #> Matrix products: default #> BLAS: /home/travis/R-bin/lib/R/lib/libRblas.so #> LAPACK: /home/travis/R-bin/lib/R/lib/libRlapack.so #> #> locale: #> [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C #> [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 #> [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 #> [7] LC_PAPER=en_US.UTF-8 LC_NAME=C #> [9] LC_ADDRESS=C LC_TELEPHONE=C #> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C #> #> attached base packages: #> [1] stats graphics grDevices utils datasets methods base #> #> other attached packages: #> [1] sessionDiffo_0.0.2 #> #> loaded via a namespace (and not attached): #> [1] zip_2.0.4 Rcpp_1.0.4.6 highr_0.8 later_1.0.0 #> [5] cellranger_1.1.0 compiler_4.0.0 pillar_1.4.4 forcats_0.5.0 #> [9] tools_4.0.0 digest_0.6.25 jsonlite_1.6.1 shinyAce_0.4.1 #> [13] evaluate_0.14 memoise_1.1.0 tibble_3.0.1 lifecycle_0.2.0 #> [17] pkgconfig_2.0.3 rlang_0.4.6 openxlsx_4.1.5 shiny_1.4.0.2 #> [21] curl_4.3 yaml_2.2.1 haven_2.2.0 pkgdown_1.5.1 #> [25] xfun_0.13 rio_0.5.16 fastmap_1.0.1 stringr_1.4.0 #> [29] knitr_1.28 desc_1.2.0 fs_1.4.1 htmlwidgets_1.5.1 #> [33] vctrs_0.2.4 hms_0.5.3 rprojroot_1.3-2 DT_0.13 #> [37] data.table_1.12.8 R6_2.4.1 readxl_1.3.1 foreign_0.8-78 #> [41] rmarkdown_2.1 carData_3.0-3 car_3.0-7 magrittr_1.5 #> [45] promises_1.1.0 backports_1.1.6 htmltools_0.4.0 ellipsis_0.3.0 #> [49] MASS_7.3-51.5 abind_1.4-5 assertthat_0.2.1 xtable_1.8-4 #> [53] mime_0.9 httpuv_1.5.2 stringi_1.4.6 crayon_1.3.4