The goseq package provides a method to detect Gene Ontology and/or other user defined categories which are over/under represented in RNA-seq data.
goseq can be found on Bioconductor (https://www.bioconductor.org/packages/goseq).
Installation
You can install the version of goseq which is on Bioconductor with these commands:
if (!require("BiocManager")) {
install.packages("BiocManager")
}
BiocManager::install("goseq")Alternatively, you can install the development version of goseq from GitHub with:
library("remotes")
remotes::install_github("federicomarini/goseq")