3D representation of a TrajectorySet object — plot.TrajectorySet • flowcatchR

Provides a visual representation of a TrajectorySet object

# S3 method for class 'TrajectorySet'
plot(x, frames, verbose = FALSE, ...)

Arguments

x: A TrajectorySet object
frames: A Frames object, used here to identify the limits of the region of interest
verbose: Logical, whether to provide additional output on the command line
...: Arguments to be passed to methods

Value

plot.TrajectorySet returns an invisible NULL.

Details

Based on the plotly library, the function extracts the region of interests from the dimensions of an image of the Frames object, and afterwards plots the x-y-time representation of the identified trajectories

Author

Federico Marini, marinif@uni-mainz.de, 2014

Examples

data("MesenteriumSubset")
data("candidate.platelets")
platelets.trajectories <- trajectories(candidate.platelets)
#> Input ParticleSet is not a LinkedParticleSet.
#> Performing linking first with some set of default parameters - you might want to change them according to your scenario...
if (FALSE) {
plot(platelets.trajectories,MesenteriumSubset)
}