Assembles information, in HTML format, regarding a Gene Ontology identifier
go_2_html(go_id, res_enrich = NULL)
Character, specifying the GeneOntology identifier for which to retrieve information
A data.frame
object, storing the result of the functional
enrichment analysis. If not provided, the experiment-related information is not
shown, and only some generic info on the identifier is displayed.
See more in the main function, GeneTonic()
, to check the
formatting requirements (a minimal set of columns should be present).
HTML content related to a GeneOntology identifier, to be displayed in web applications (or inserted in Rmd documents)
Also creates a link to the AmiGO database
go_2_html("GO:0002250")
#> <b>GO ID: </b><a href = "http://amigo.geneontology.org/amigo/term/GO:0002250" target = "_blank" class = "btn btn-primary" style = "color: #ffffff; background-color: #0092AC">GO:0002250</a><br/><b>Term: </b>adaptive immune response<br/><b>Ontology: </b>BP<br/><br/><b>Definition: </b>An immune response mediated by cells expressing specific receptors for antigens produced through a somatic diversification process, and allowing for an enhanced secondary response to subsequent exposures to the same antigen (immunological memory).<br/><b>Synonym: </b>acquired immune response<br/><b>Synonym: </b>immune memory response<br/>
go_2_html("GO:0043368")
#> <b>GO ID: </b><a href = "http://amigo.geneontology.org/amigo/term/GO:0043368" target = "_blank" class = "btn btn-primary" style = "color: #ffffff; background-color: #0092AC">GO:0043368</a><br/><b>Term: </b>positive T cell selection<br/><b>Ontology: </b>BP<br/><br/><b>Definition: </b>The process of sparing immature T cells which react with self-MHC protein complexes with low affinity levels from apoptotic death.<br/><b>Synonym: </b>positive T lymphocyte selection<br/><b>Synonym: </b>positive T-cell selection<br/><b>Synonym: </b>positive T-lymphocyte selection<br/>