Assembles information, in HTML format, regarding a Gene Ontology identifier
go_2_html(go_id, res_enrich = NULL)Character, specifying the GeneOntology identifier for which to retrieve information
A data.frame object, storing the result of the functional
enrichment analysis. If not provided, the experiment-related information is not
shown, and only some generic info on the identifier is displayed.
See more in the main function, GeneTonic(), to check the
formatting requirements (a minimal set of columns should be present).
HTML content related to a GeneOntology identifier, to be displayed in web applications (or inserted in Rmd documents)
Also creates a link to the AmiGO database
go_2_html("GO:0002250")
#> Warning: Please use `mosdef::go_to_html()` in replacement of the `go_2_html()` function, originally located in the GeneTonic package.
#> Check the manual page for `?mosdef::go_to_html()` to see the details on how to use it
#> <b>GO ID: </b><a href="http://amigo.geneontology.org/amigo/term/GO:0002250" target="_blank" class="btn btn-primary" style = "color: #ffffff; background-color: #0092AC">GO:0002250@AMIGO</a><br/><b>Pubmed results: </b><a href="https://pubmed.ncbi.nlm.nih.gov/?term=adaptive immune response" target="_blank" class="btn btn-primary" style = "color: #ffffff; background-color: #0092AC">adaptive immune response@Pubmed</a><br/><b>Term: </b>adaptive immune response<br/><b>Ontology: </b>BP<br/><br/><b>Definition: </b>An immune response mediated by cells expressing specific receptors for antigens produced through a somatic diversification process, and allowing for an enhanced secondary response to subsequent exposures to the same antigen (immunological memory).<br/><b>Synonym: </b>acquired immune response<br/><b>Synonym: </b>immune memory response<br/>
go_2_html("GO:0043368")
#> Warning: Please use `mosdef::go_to_html()` in replacement of the `go_2_html()` function, originally located in the GeneTonic package.
#> Check the manual page for `?mosdef::go_to_html()` to see the details on how to use it
#> <b>GO ID: </b><a href="http://amigo.geneontology.org/amigo/term/GO:0043368" target="_blank" class="btn btn-primary" style = "color: #ffffff; background-color: #0092AC">GO:0043368@AMIGO</a><br/><b>Pubmed results: </b><a href="https://pubmed.ncbi.nlm.nih.gov/?term=positive T cell selection" target="_blank" class="btn btn-primary" style = "color: #ffffff; background-color: #0092AC">positive T cell selection@Pubmed</a><br/><b>Term: </b>positive T cell selection<br/><b>Ontology: </b>BP<br/><br/><b>Definition: </b>The process of sparing immature T cells which react with self-MHC protein complexes with low affinity levels from apoptotic death.<br/><b>Synonym: </b>positive T lymphocyte selection<br/><b>Synonym: </b>positive T-cell selection<br/><b>Synonym: </b>positive T-lymphocyte selection<br/>